DOI: 10.18129/B9.bioc.EBImage![Free downloads for mac Free downloads for mac](/uploads/1/2/6/7/126730005/252683371.jpg)
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Image processing and analysis toolbox for R
Bioconductor version: Release (3.11)
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
10,430 downloads Updated: June 25, 2020 GPL. Review Free Download specifications 100% FREE report malware. RStudio provides free and open source tools for R and enterprise-ready professional software for data science teams to develop and share their work at scale. Download R Portable - It allows writing code in R programming language in a comfortable way and includes the possibility to import packages without any effort.
Download the most recent version of R. The R FAQs and the R Installation and Administration Manual contain detailed instructions for installing R on various platforms (Linux, OS X. Download new gfortran binaries for your operating system from here and decompress the folder (eg: gunzip gfortran-8.3-bin.tar.gz). Then run, sudo tar -xvf gfortran-8.3-bin.tar -C / which will install everything in /usr/local/bin/gfortran.
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
Citation (from within R, enter
citation('EBImage')
):Installation
Mortal kombat 9 mac free download. To install this package, start R (version '4.0') and enter:
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
![Free downloads for mac Free downloads for mac](/uploads/1/2/6/7/126730005/252683371.jpg)
To view documentation for the version of this package installed in your system, start R and enter:
HTML | R Script | Introduction to EBImage |
Reference Manual | ||
Text | NEWS |
Details
biocViews | Software, Visualization |
Version | 4.30.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (14.5 years) |
License | LGPL |
Depends | methods |
Imports | BiocGenerics(>= 0.7.1), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl |
LinkingTo | |
Suggests | BiocStyle, digest, knitr, rmarkdown, shiny |
SystemRequirements | |
Enhances | |
URL | https://github.com/aoles/EBImage |
BugReports | https://github.com/aoles/EBImage/issues |
Depends On Me | Cardinal, CRImage, cytomapper, DonaPLLP2013, FISHalyseR, flowcatchR, furrowSeg, HD2013SGI, imageHTS |
Imports Me | bnbc, CONFESS, flowCHIC, heatmaps, MaxContrastProjection, sojourner, yamss |
Suggests Me | DmelSGI, HilbertVis, tofsims |
Links To Me | |
Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EBImage_4.30.0.tar.gz |
Windows Binary | EBImage_4.29.2.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | EBImage_4.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EBImage |
Source Repository (Developer Access) | git clone [email protected]:packages/EBImage |
Package Short Url | https://bioconductor.org/packages/EBImage/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
For most users, we recommend installing the official Seurat release from CRAN, using the instructions here
Alternative : Install development version from source
Install the development version of Seurat - directly from Github.
Troubleshooting
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Instagram bot free. Rpg maker mac os x download. If you see the following message: Warning: Installed Rcpp (0.12.12) different from Rcpp used to build dplyr (0.12.11).Please reinstall dplyr to avoid random crashes or undefined behavior.Reinstall dplyr from source with the following command:
If you are trying to compile under R >= 3.4 on a Mac, the latest versions of R use Clang 4.0.0 and GNU Fortran 6.1 which you will need to successfully compile and install Seurat. Here’s a link to the official R page that provides some guidance on those.
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For older R versions, installing from source causes errors on some standard Mac installs due to R being compiled using gfortran-4.8. They will look something like
To fix this, refer to the following blog post. NOTE: you will need sudo permissions.
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Another potential solution to this issue that doesn’t require sudo permission (credit to Michael Steinbaugh) can be found here.
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- Install R (v >= 3.2)
- Recommended : Install R Studio
- App store wont download apps mac. Install the “devtools” package from Hadley Wickham
- Install Rtools
- Ensure that Java is installed.
- Open CommandPrompt and type
java -version
- If this doesn’t return a version of java >= 1.6, download the latest Java SDK from Oracle and run the installer.
- Restart the R session
- Open CommandPrompt and type
- Install Seurat - directly from Github.